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Fix merge conflicts
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.github/build.sh

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#!/bin/sh
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curl -fsLO https://raw.githubusercontent.com/scijava/scijava-scripts/master/ci-build.sh
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curl -fsLO https://raw.githubusercontent.com/scijava/scijava-scripts/main/ci-build.sh
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sh ci-build.sh

.github/setup.sh

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#!/bin/sh
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curl -fsLO https://raw.githubusercontent.com/scijava/scijava-scripts/master/ci-setup-github-actions.sh
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curl -fsLO https://raw.githubusercontent.com/scijava/scijava-scripts/main/ci-setup-github-actions.sh
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sh ci-setup-github-actions.sh

.github/workflows/build-pr.yml

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.github/workflows/build-main.yml renamed to .github/workflows/build.yml

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- master
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tags:
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- "*-[0-9]+.*"
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pull_request:
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branches:
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- master
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jobs:
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build:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- name: Cache m2 folder
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uses: actions/cache@v2
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env:
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cache-name: cache-m2
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with:
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path: ~/.m2/repository
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key: ${{ runner.os }}-build-${{ env.cache-name }}
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restore-keys: |
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${{ runner.os }}-build-${{ env.cache-name }}-
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${{ runner.os }}-build-
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${{ runner.os }}-
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- name: Set up JDK 8
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uses: actions/setup-java@v2
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- name: Set up Java
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uses: actions/setup-java@v3
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with:
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java-version: '8'
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distribution: 'zulu'
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cache: 'maven'
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- name: Set up CI environment
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run: .github/setup.sh
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- name: Install blosc
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run: sudo apt install libblosc-dev
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- name: Execute the build
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run: .github/build.sh
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env:
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GPG_KEY_NAME: ${{ secrets.GPG_KEY_NAME }}
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GPG_PASSPHRASE: ${{ secrets.GPG_PASSPHRASE }}
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MAVEN_USER: ${{ secrets.MAVEN_USER }}
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MAVEN_PASS: ${{ secrets.MAVEN_PASS }}
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OSSRH_USER: ${{ secrets.OSSRH_USER }}
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OSSRH_PASS: ${{ secrets.OSSRH_PASS }}
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SIGNING_ASC: ${{ secrets.SIGNING_ASC }}

LICENSE.txt

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Copyright (c) 2018 - 2023, EMBL
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Copyright (c) 2018 - 2025, EMBL
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All rights reserved.
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Redistribution and use in source and binary forms, with or without modification,

README.md

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[![Build Status](https://github.com/bigdataprocessor/bigdataprocessor2/actions/workflows/build.yml/badge.svg)](https://github.com/bigdataprocessor/bigdataprocessor2/actions/workflows/build.yml)
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[![DOI](https://zenodo.org/badge/161612516.svg)](https://zenodo.org/badge/latestdoi/161612516)
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<img src="./docs/images/BDP2-icon.png" width="300">

pom.xml

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<groupId>de.embl.cba</groupId>
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<artifactId>bigDataProcessor2</artifactId>
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<version>1.8.0-SNAPSHOT</version>
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<url>https://github.com/bigdataprocessor/bigdataprocessor2</url>
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<name>BigDataProcessor2</name>
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<description>Fiji plugin for inspection and processing of big image data</description>
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</mailingList>
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</mailingLists>
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<scm>
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<connection>scm:git:git@github.com:bigdataprocessor/bigdataprocessor2</connection>
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<connection>scm:git:https://github.com/bigdataprocessor/bigdataprocessor2</connection>
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<developerConnection>scm:git:[email protected]:bigdataprocessor/bigdataprocessor2</developerConnection>
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<tag>bigDataProcessor2-1.7.0</tag>
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<tag>HEAD</tag>
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<url>https://github.com/bigdataprocessor/bigdataprocessor2</url>
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</scm>
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<issueManagement>
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<dependency>
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<groupId>org.junit.jupiter</groupId>
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<artifactId>junit-jupiter-api</artifactId>
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<version>5.4.2</version>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.junit.jupiter</groupId>
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<artifactId>junit-jupiter-engine</artifactId>
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<version>5.4.2</version>
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<scope>test</scope>
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</dependency>
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</dependencies>

src/main/java/de/embl/cba/bdp2/BigDataProcessor2.java

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* #%L
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* Fiji plugin for inspection and processing of big image data
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* %%
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* Copyright (C) 2018 - 2023 EMBL
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* Copyright (C) 2018 - 2025 EMBL
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* %%
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* Redistribution and use in source and binary forms, with or without
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* modification, are permitted provided that the following conditions are met:

src/main/java/de/embl/cba/bdp2/BigDataProcessor2Command.java

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* #%L
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* Fiji plugin for inspection and processing of big image data
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* %%
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* Copyright (C) 2018 - 2023 EMBL
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* Copyright (C) 2018 - 2025 EMBL
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* %%
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* Redistribution and use in source and binary forms, with or without
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* modification, are permitted provided that the following conditions are met:

src/main/java/de/embl/cba/bdp2/BigDataProcessor2Menu.java

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* #%L
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* Fiji plugin for inspection and processing of big image data
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* %%
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* Copyright (C) 2018 - 2023 EMBL
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* Copyright (C) 2018 - 2025 EMBL
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* %%
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* Redistribution and use in source and binary forms, with or without
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* modification, are permitted provided that the following conditions are met:

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