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fixup: keep runnable script in line with walkthrough
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README.md

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@@ -172,14 +172,14 @@ datalad run -m "Downgrade/Freeze mriqc container version" \
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# hardcode for mriqc to workaround an issue. So let's remove it
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datalad run -m "Remove ad-hoc option for mriqc for older frozen version" sed -i -e 's, --no-datalad-get,,g' .datalad/config
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# Install input data:
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datalad install -d . -s https://github.com/ReproNim/ds000003-demo sourcedata/raw
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datalad install -d . -s https://github.com/ReproNim/ds000003-demo sourcedata
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# Setup git to ignore workdir to be used by pipelines
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echo "workdir/" > .gitignore && datalad save -m "Ignore workdir" .gitignore
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# Execute desired preprocessing while creating a provenance record
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# in git history
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datalad containers-run \
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-n bids-mriqc \
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--input sourcedata/raw \
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--input sourcedata \
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--output . \
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'{inputs}' '{outputs}' participant group -w workdir
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)

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