Add reprostim recipe for 0.7.13

Author: yarikoptic

images/repronim/Singularity.repronim-reprostim-0.7.13

@@ -0,0 +1,189 @@
+# Generated by Neurodocker and Reproenv.
+
+Bootstrap: docker
+From: neurodebian:bookworm
+
+%environment
+export LANG="en_US.UTF-8"
+export LC_ALL="en_US.UTF-8"
+export ND_ENTRYPOINT="/neurodocker/startup.sh"
+
+%post
+export ND_ENTRYPOINT="/neurodocker/startup.sh"
+apt-get update -qq
+apt-get install -y -q --no-install-recommends \
+    apt-utils \
+    bzip2 \
+    ca-certificates \
+    curl \
+    locales \
+    unzip
+rm -rf /var/lib/apt/lists/*
+sed -i -e 's/# en_US.UTF-8 UTF-8/en_US.UTF-8 UTF-8/' /etc/locale.gen
+dpkg-reconfigure --frontend=noninteractive locales
+update-locale LANG="en_US.UTF-8"
+chmod 777 /opt && chmod a+s /opt
+mkdir -p /neurodocker
+if [ ! -f "$ND_ENTRYPOINT" ]; then
+  echo '#!/usr/bin/env bash' >> "$ND_ENTRYPOINT"
+  echo 'set -e' >> "$ND_ENTRYPOINT"
+  echo 'export USER="${USER:=`whoami`}"' >> "$ND_ENTRYPOINT"
+  echo 'if [ -n "$1" ]; then "$@"; else /usr/bin/env bash; fi' >> "$ND_ENTRYPOINT";
+fi
+chmod -R 777 /neurodocker && chmod a+s /neurodocker
+
+apt-get update -qq
+apt-get install -y -q --no-install-recommends \
+    build-essential \
+    curl \
+    git \
+    gnupg \
+    less \
+    libasound2-dev \
+    libcanberra-gtk3-module \
+    libgtk-3-dev \
+    libusb-1.0-0-dev \
+    libwxgtk-media3.2-dev \
+    libwxgtk-webview3.2-dev \
+    libwxgtk3.2-dev \
+    ncdu \
+    pavucontrol \
+    pigz \
+    pkg-config \
+    portaudio19-dev \
+    procps \
+    pulseaudio \
+    pulseaudio-utils \
+    python3 \
+    python3-pip \
+    strace \
+    sudo \
+    time \
+    tree \
+    vim \
+    wget
+rm -rf /var/lib/apt/lists/*
+
+git clone https://github.com/wieluk/psychopy_linux_installer/ /opt/psychopy-installer; cd /opt/psychopy-installer; git checkout tags/v1.4.3
+
+/opt/psychopy-installer/psychopy_linux_installer --install-dir=/opt/psychopy --psychopy-version=2024.2.5 --additional-packages=psychopy_bids==2024.2.2 --python-version=3.10 --wxpython-version=4.2.2 -v -f
+
+/opt/psychopy/psychopy_2024.2.5_py3.10/bin/pip install reprostim[all,disp_mon]==0.7.13
+
+bash -c 'ln -s /opt/psychopy/psychopy_2024.2.5_py3.10/bin/psychopy /usr/local/bin/'
+
+bash -c 'b=$(ls /opt/psychopy/psychopy_2024.2.5_py3.10/bin/python3); echo -e "#!/bin/sh\n$b \"\$@\"" >| /usr/local/bin/python3; chmod a+x /usr/local/bin/python3'
+
+# Save specification to JSON.
+printf '{ \
+  "pkg_manager": "apt", \
+  "existing_users": [ \
+    "root" \
+  ], \
+  "instructions": [ \
+    { \
+      "name": "from_", \
+      "kwds": { \
+        "base_image": "neurodebian:bookworm" \
+      } \
+    }, \
+    { \
+      "name": "env", \
+      "kwds": { \
+        "LANG": "en_US.UTF-8", \
+        "LC_ALL": "en_US.UTF-8", \
+        "ND_ENTRYPOINT": "/neurodocker/startup.sh" \
+      } \
+    }, \
+    { \
+      "name": "run", \
+      "kwds": { \
+        "command": "export ND_ENTRYPOINT=\\"/neurodocker/startup.sh\\"\\napt-get update -qq\\napt-get install -y -q --no-install-recommends \\\\\\n    apt-utils \\\\\\n    bzip2 \\\\\\n    ca-certificates \\\\\\n    curl \\\\\\n    locales \\\\\\n    unzip\\nrm -rf /var/lib/apt/lists/*\\nsed -i -e '"'"'s/# en_US.UTF-8 UTF-8/en_US.UTF-8 UTF-8/'"'"' /etc/locale.gen\\ndpkg-reconfigure --frontend=noninteractive locales\\nupdate-locale LANG=\\"en_US.UTF-8\\"\\nchmod 777 /opt && chmod a+s /opt\\nmkdir -p /neurodocker\\nif [ ! -f \\"$ND_ENTRYPOINT\\" ]; then\\n  echo '"'"'#!/usr/bin/env bash'"'"' >> \\"$ND_ENTRYPOINT\\"\\n  echo '"'"'set -e'"'"' >> \\"$ND_ENTRYPOINT\\"\\n  echo '"'"'export USER=\\"${USER:=`whoami`}\\"'"'"' >> \\"$ND_ENTRYPOINT\\"\\n  echo '"'"'if [ -n \\"$1\\" ]; then \\"$@\\"; else /usr/bin/env bash; fi'"'"' >> \\"$ND_ENTRYPOINT\\";\\nfi\\nchmod -R 777 /neurodocker && chmod a+s /neurodocker" \
+      } \
+    }, \
+    { \
+      "name": "install", \
+      "kwds": { \
+        "pkgs": [ \
+          "build-essential", \
+          "pkg-config", \
+          "git", \
+          "sudo", \
+          "libgtk-3-dev", \
+          "libwxgtk3.2-dev", \
+          "libwxgtk-media3.2-dev", \
+          "libwxgtk-webview3.2-dev", \
+          "libcanberra-gtk3-module", \
+          "libusb-1.0-0-dev", \
+          "portaudio19-dev", \
+          "libasound2-dev", \
+          "pulseaudio", \
+          "pavucontrol", \
+          "pulseaudio-utils", \
+          "vim", \
+          "wget", \
+          "strace", \
+          "time", \
+          "ncdu", \
+          "gnupg", \
+          "curl", \
+          "procps", \
+          "pigz", \
+          "less", \
+          "tree", \
+          "python3", \
+          "python3-pip" \
+        ], \
+        "opts": null \
+      } \
+    }, \
+    { \
+      "name": "run", \
+      "kwds": { \
+        "command": "apt-get update -qq\\napt-get install -y -q --no-install-recommends \\\\\\n    build-essential \\\\\\n    curl \\\\\\n    git \\\\\\n    gnupg \\\\\\n    less \\\\\\n    libasound2-dev \\\\\\n    libcanberra-gtk3-module \\\\\\n    libgtk-3-dev \\\\\\n    libusb-1.0-0-dev \\\\\\n    libwxgtk-media3.2-dev \\\\\\n    libwxgtk-webview3.2-dev \\\\\\n    libwxgtk3.2-dev \\\\\\n    ncdu \\\\\\n    pavucontrol \\\\\\n    pigz \\\\\\n    pkg-config \\\\\\n    portaudio19-dev \\\\\\n    procps \\\\\\n    pulseaudio \\\\\\n    pulseaudio-utils \\\\\\n    python3 \\\\\\n    python3-pip \\\\\\n    strace \\\\\\n    sudo \\\\\\n    time \\\\\\n    tree \\\\\\n    vim \\\\\\n    wget\\nrm -rf /var/lib/apt/lists/*" \
+      } \
+    }, \
+    { \
+      "name": "run", \
+      "kwds": { \
+        "command": "git clone https://github.com/wieluk/psychopy_linux_installer/ /opt/psychopy-installer; cd /opt/psychopy-installer; git checkout tags/v1.4.3" \
+      } \
+    }, \
+    { \
+      "name": "run", \
+      "kwds": { \
+        "command": "/opt/psychopy-installer/psychopy_linux_installer --install-dir=/opt/psychopy --psychopy-version=2024.2.5 --additional-packages=psychopy_bids==2024.2.2 --python-version=3.10 --wxpython-version=4.2.2 -v -f" \
+      } \
+    }, \
+    { \
+      "name": "run", \
+      "kwds": { \
+        "command": "/opt/psychopy/psychopy_2024.2.5_py3.10/bin/pip install reprostim[all,disp_mon]==0.7.13" \
+      } \
+    }, \
+    { \
+      "name": "run", \
+      "kwds": { \
+        "command": "bash -c '"'"'ln -s /opt/psychopy/psychopy_2024.2.5_py3.10/bin/psychopy /usr/local/bin/'"'"'" \
+      } \
+    }, \
+    { \
+      "name": "run", \
+      "kwds": { \
+        "command": "bash -c '"'"'b=$\(ls /opt/psychopy/psychopy_2024.2.5_py3.10/bin/python3\); echo -e \\"#!/bin/sh\\\\n$b \\\\\\"\\\\$@\\\\\\"\\" >| /usr/local/bin/python3; chmod a+x /usr/local/bin/python3'"'"'" \
+      } \
+    }, \
+    { \
+      "name": "entrypoint", \
+      "kwds": { \
+        "args": [ \
+          "python3" \
+        ] \
+      } \
+    } \
+  ] \
+}' > /.reproenv.json
+# End saving to specification to JSON.
+
+%runscript
+python3