diff --git a/10.5281_zenodo.4139359/article.bib b/10.5281_zenodo.4139359/article.bib new file mode 100644 index 0000000..80816be --- /dev/null +++ b/10.5281_zenodo.4139359/article.bib @@ -0,0 +1,22 @@ +@Article {Davies:2020, + author = {Iain Davies and Stephen Eglen}, + title = {{[Re] The principal components of natural images}}, + journal = {ReScience C}, + year = {2020}, + month = {10}, + volume = {6}, + number = {3}, + pages = {{#6}}, + doi = {10.5281/zenodo.4139359}, + url = {https://zenodo.org/record/4139359/files/article.pdf}, + code_url = {https://github.com/IainDaviesMaths/Reproduction-Hancock.git}, + code_doi = {10.5281/zenodo.4139727}, + code_swh = {}, + data_url = {}, + data_doi = {}, + review_url = {https://github.com/ReScience/submissions/issues/45}, + type = {Replication}, + language = {Julia}, + domain = {Computational Neuroscience}, + keywords = {PCA, principal component analysis, MATLAB, V1, natural images, visual cortex} +} \ No newline at end of file diff --git a/10.5281_zenodo.4139359/article.pdf b/10.5281_zenodo.4139359/article.pdf new file mode 100644 index 0000000..7d2f1aa Binary files /dev/null and b/10.5281_zenodo.4139359/article.pdf differ diff --git a/10.5281_zenodo.4139359/article.yaml b/10.5281_zenodo.4139359/article.yaml new file mode 100644 index 0000000..c6e72b7 --- /dev/null +++ b/10.5281_zenodo.4139359/article.yaml @@ -0,0 +1,121 @@ +# To be filled by the author(s) at the time of submission +# ------------------------------------------------------- + +# Title of the article: +# - For a successful replication, it should be prefixed with "[Re]" +# - For a failed replication, it should be prefixed with "[¬Re]" +# - For other article types, no instruction (but please, not too long) +title: "[Re] The principal components of natural images" + +# List of authors with name, orcid number, email and affiliation +# Affiliation "*" means contact author (required even for single-authored papers) +authors: + - name: Iain Davies + orcid: 0000-0002-5361-6285 + email: id318@cam.c.uk + affiliations: 1,* + + - name: Stephen Eglen + orcid: 0000-0001-8607-8025 + email: sje30@cam.ac.uk + affiliations: 1 + +# List of affiliations with code (corresponding to author affiliations), name +# and address. You can also use these affiliations to add text such as "Equal +# contributions" as name (with no address). +affiliations: + - code: 1 + name: Department of Applied Mathematics and Theoretical Physics, Cambridge University + address: Cambridge, UK + +# List of keywords (adding the programming language might be a good idea) +keywords: PCA, principal component analysis, MATLAB, V1, natural images, visual cortex + +# Code URL and DOI/SWH (url is mandatory for replication, doi after acceptance) +# You can get a DOI for your code from Zenodo, or an SWH identifier from +# Software Heritage. +# see https://guides.github.com/activities/citable-code/ +code: + - url: https://github.com/IainDaviesMaths/Reproduction-Hancock.git + - doi: 10.5281/zenodo.4139727 + - swh: + +# Data URL and DOI (optional if no data) +data: + - url: + - doi: + +# Information about the original article that has been replicated +replication: + - cite: Hancock, P. et al, 1991 The Principal Components of Natural Images + - bib: # Bibtex key (if any) in your bibliography file + - url: http://citeseerx.ist.psu.edu/viewdoc/download;jsessionid=044DFF560FC2E801B579C2F23D268B44?doi=10.1.1.41.192&rep=rep1&type=pdf + - doi: 10.1088/0954-898X/3/1/008 + +# Don't forget to surround abstract with double quotes +abstract: "The visual cortex has long been the subject of study for computational + neuroscientists. Various neural network techniques have been applied + in attempts to recreate the receptive fields found experimentally in + visual cortex cells. In 1991 Hancock et al used an algorithm designed + by Sanger in 1989 to perform Principal Component Analysis on a series + of natural greyscale images, which replicated some features of + receptive fields found in the V1 of cats, although they noted that + many of the complex principal components were not found. Moreover, + they showed that Sanger's algorithm was able to find distinguishing + features in text images as well as natural images, an important find in + the study of neural networks." + +# Bibliography file (yours) +bibliography: bibliography.bib + +# Type of the article +# Type can be: +# * Editorial +# * Letter +# * Replication +type: Replication + +# Scientific domain of the article (e.g. Computational Neuroscience) +# (one domain only & try to be not overly specific) +domain: Computational Neuroscience + +# Coding language (main one only if several) +language: Julia + + +# To be filled by the author(s) after acceptance +# ----------------------------------------------------------------------------- + +# For example, the URL of the GitHub issue where review actually occured +review: + - url: https://github.com/ReScience/submissions/issues/45 + +contributors: + - name: Tiziano Zito + orcid: 0000-0002-7199-7456 + role: editor + - name: Pietro Berkes + orcid: + role: reviewer + - name: Christian Jarvers + orcid: 0000-0003-0062-9776 + role: reviewer + +# This information will be provided by the editor +dates: + - received: July 17, 2020 + - accepted: October 27, 2020 + - published: October 28, 2020 + +# This information will be provided by the editor +article: + - number: 6 + - doi: 10.5281/zenodo.4139359 + - url: https://zenodo.org/record/4139359/files/article.pdf + +# This information will be provided by the editor +journal: + - name: "ReScience C" + - issn: 2430-3658 + - volume: 6 + - issue: 3