1.0.0

What's Changed

• Fixes documentation deployment on publish by @StephenNneji in #185
• Added correct branch cut into Abeles by @arwelHughes in #186
• Unifies variable naming conventions by @DrPaulSharp in #187
• Moves additional reflectivity calculation into compiled "RATMain.m" by @DrPaulSharp in #189
• Fixes domain contrasts bug in "writeScript" routine by @DrPaulSharp in #198
• Updated examples by @arwelHughes in #192
• Disables some live script example in unit tests by @StephenNneji in #199
• Updates naming convention for main RAT variables by @DrPaulSharp in #194
• Modifies the CPP custom layer interface to use std::vector by @StephenNneji in #195
• Refactors event manager to use enum class and std::function by @StephenNneji in #202
• Adds action to deploy generated C++ code to a separate branch by @StephenNneji in #203
• Bug fix in test suite by @DrPaulSharp in #205
• Moves "packParams" call into "parseClassToStructs.m" to ensure arrays… by @DrPaulSharp in #206
• Simplifies output from RAT Main by @DrPaulSharp in #207
• Fixes bug where Linux nightly archive was not overwritten by @StephenNneji in #209
• Removes "calculate" routines from target functions by @DrPaulSharp in #208
• Add progress event by @StephenNneji in #210
• Deploys C++ from artifact instead of nightly by @StephenNneji in #211
• Uses enums in the coder generated code by @StephenNneji in #213
• Combines serial and parallel routines by @DrPaulSharp in #217
• Refactors result and controls by @DrPaulSharp in #214
• Updated the documentation by @arwelHughes in #215
• Refactors Bayes Results Struct by @DrPaulSharp in #212
• Changes theme and clean up docs source files by @StephenNneji in #219
• Adds background actions field to contrasts by @DrPaulSharp in #220
• Removes code for qzshifts and undefined layers by @DrPaulSharp in #223
• New documentation2 by @arwelHughes in #222
• Adds code to prevent setting parameter values outside of their limits by @DrPaulSharp in #224
• Adds "functionName" field to "customFileClass" by @DrPaulSharp in #225
• Removes ambiguity when incorrect options are passed to the calculation by @StephenNneji in #227
• Adds set resolution routines by @DrPaulSharp in #228
• Fixes bug where array size were different in python bindings by @StephenNneji in #229
• Implements set custom path in CustomFile class by @StephenNneji in #230
• Adds extrapolation method to calls to "interp1" by @DrPaulSharp in #233
• Added Event Updates to DE by @arwelHughes in #231
• Removes "bestFitMean" from "BayesResults" by @DrPaulSharp in #234
• Fixes matlab custom function name bug by @StephenNneji in #235
• Adds code to ensure parameter array indices are valid by @DrPaulSharp in #236
• Adds code to convert backgrounds to background parameters by @DrPaulSharp in #237
• Adds clone function for project class by @StephenNneji in #239
• Updates DREAM defaults by @DrPaulSharp in #240
• Adds update properties to DE controls procedure by @DrPaulSharp in #241
• Custom file Changes by @StephenNneji in #242
• Fixes live plot issue by @StephenNneji in #244
• Refactors the event data packing to include the full shape of the data array by @StephenNneji in #246
• Unifies default parameters by @DrPaulSharp in #247
• Updates nightly release by @StephenNneji in #248
• Fixes a typo in projectClassToR1 by @alexhroom in #250
• Add contrast names to plot event data by @StephenNneji in #251
• Raises errors if attempt to use function or data backgrounds by @alexhroom in #252
• Adds code to check for invalid procedures in RATMain by @DrPaulSharp in #256
• Adds a stop event that works via a temp IPC file by @StephenNneji in #255
• Adds bug fix for nested sampler by @DrPaulSharp in #259
• Adds optional validation for whole numbers to validateNumber by @DrPaulSharp in #260
• Updates Examples by @DrPaulSharp in #262
• Refactors to improve performance by @DrPaulSharp in #257
• Replaces the essential fprintf with message events by @StephenNneji in #261
• Splits resampleParams into two params by @alexhroom in #263
• Fixes memory bugs and removes unused code and routines by @DrPaulSharp in #264
• Removes unnecessary coder varsize calls by @DrPaulSharp in #267
• Bug fixes for DE minimiser and domains calculations by @DrPaulSharp in #268
• Fix DE crash by @StephenNneji in #272
• Bug fix in parameters class by @DrPaulSharp in #273
• Refactors the parametersClass and updates tests by @StephenNneji in #274
• Adds options to plotRefSLD by @StephenNneji in #270
• Uses same x data for reflectivity and sld curves and shaded plots by @DrPaulSharp in #249
• Reduces "bayesShadedPlot" to use only the "mean" fit option by @DrPaulSharp in #277
• Fixes plotRefSLDHelper defaults by @StephenNneji in #279
• Adds missing data for tutorial by @StephenNneji in #280
• Replaces varargin in bayesShadedPlot with argument block by @StephenNneji in #282
• Add Data and Function Background types by @DrPaulSharp in #276
• Removes the docs directory and the m2html submodule by @StephenNneji in #289
• Removes "problemCells" from the code by @DrPaulSharp in #292
• Replaced non-polarised calculation with normal calculation by @StephenNneji in #281
• Adds labels to plot, renames defaultProject.mat, and other refactors by @StephenNneji in #293
• Removes limits from reflectivityCalculation and refactors build by @DrPaulSharp in #294
• Reverts action to run on all servers by @StephenNneji in #295
• Converts "fitParams" and "otherParams" to row arrays by @DrPaulSharp in #301
• Adds script to generate tutorial example data by @StephenNneji in #302
• Fix exception handling by @StephenNneji in #305
• Changes plot data for "bayesShadedPlot" to that in "predictionIntervals" by @DrPaulSharp in #310
• Fixes exception build issue by @StephenNneji in #311
• Adds uncertainty to nested sampler output by @alexhroom in #304
• Implements updateFreq for simplex and de by @StephenNneji in #309
• Non-fit parameters from RasCAL-1 projects now have their constraints adjusted by @alexhroom in #314
• Adds some of the rascal 1 demo projects to examples by @StephenNneji in #308
• Fixes q4 shaded plot bug by @DrPaulSharp in #316
• Adds test data for imaginary functions by @DrPaulSharp in #319
• Refactors resolutions to fully incorporate data resolutions by @DrPaulSharp in #315
• Refactors variables and docstrings in groupLayers routines by @DrPaulSharp in #320
• Adds MATLAB and Cpp custom function support for backgrounds by @StephenNneji in #318
• Makes the search strategy enum accept string and index by @StephenNneji in #322
• Refactors the bayesBenchmark example by @alexhroom in #306
• Nested Sampler Fix by @arwelHughes in #303
• Adds absorption example to test data by @DrPaulSharp in #325
• Adds plotChain convenience function and fixes plotHists by @alexhroom in #327
• Limits fWeight to be greater than zero by @alexhroom in #326
• Changes error in customFile class to warning by @StephenNneji in #331
• replaces randsample with a custom-built randSample function and removes range by @alexhroom in #324
• Adds setters for projectClass properties by @DrPaulSharp in #335
• Fixes broken livescript by @StephenNneji in #337
• Refactors build scripts and ensures the generated cpp is compiled into object files by @StephenNneji in #333
• Updates dostrings in controlsClass, RAT function, plotting and some utilities by @StephenNneji in #342
• Adds remove methods for all API classes by @DrPaulSharp in #347
• Refactors contrasts to allow model to be set with add/set methods by @DrPaulSharp in #346
• Improves the custom file conflict warning by @StephenNneji in #349
• Removes unused fields from priors struct by @DrPaulSharp in #348
• Adds C struct names for generated code by @StephenNneji in #350
• Removed debug print statements from nested sampler and added errors where necessary by @alexhroom in #351
• Adds .ort file reader by @alexhroom in #336
• Refactors corner plot by @StephenNneji in #332
• Removes unused properties from the API by @DrPaulSharp in #356
• Refactors to ensure consistent use of case by @StephenNneji in #354
• Removes unused routines by @DrPaulSharp in #357
• Adds docstring for parameter class and some refactors by @StephenNneji in #358
• Adds Jeffreys' prior to NS and makes various small fixes by @alexhroom in #359
• Fixes bug in Bayes confidence intervals by @DrPaulSharp in #361
• Removes imaginary versions of routines by @DrPaulSharp in #362
• Refactors reflectivity calculations by @DrPaulSharp in #363
• Fixes bug in r1ToProjectClass by @StephenNneji in #367
• Adds docstrings for background, resolutions, and project class and some refactors by @StephenNneji in #364
• Adds docstrings for minimisers and removed unused functions by @alexhroom in #366
• Fixes bug for standard layers without hydration by @DrPaulSharp in #374
• Ensure nChains > 1 by @alexhroom in #377
• Refactors build and results struct by @DrPaulSharp in #369
• Fixes the nSamples docstring by @alexhroom in #378
• Refactors Abeles calculation by @DrPaulSharp in #379
• Changes corner plots to use KDE smoothing by @alexhroom in #368
• Fixes bugs introduced by refactors by @StephenNneji in #381
• Improves DREAM log-prior and adds Jeffreys prior by @alexhroom in #380
• Fixes bug in domainContrastsClass by @StephenNneji in #386
• Refactors Abeles Calculation by @DrPaulSharp in #385
• Adds more docstring by @StephenNneji in #387
• Improves error messages by @StephenNneji in #388
• Implements repeat layers by @DrPaulSharp in #383
• Adds docstrings to enums by @alexhroom in #391
• Refactors layers by @StephenNneji in #393
• Adds docstrings for main calculation and multiTypeTable by @alexhroom in #392
• Adds docstring for contrasts and some refactors by @StephenNneji in #389
• Updates version to 1.0.0 by @StephenNneji in #394
• Fixes README typos and add docs link by @alexhroom in #395

New Contributors

• @alexhroom made their first contribution in #250

Full Changelog: v1.0.0-beta...1.0.0