Implement structural alignment functionality with new StructuralAligner class and associated models. Update example notebook to reflect changes and suppress known warnings. Adjust output handling in the notebook and fix import paths.

Author: haeussma

example.ipynb

@@ -1,7 +1,3 @@
-"""
-Pydantic models for structural alignment data structures.
-"""
-
 from typing import Dict, List, Optional, Tuple
 
 import numpy as np

structure_align/__init__.py renamed to structurealign/__init__.py

@@ -5,7 +5,7 @@
 import numpy as np
 import pytest
 
-from structure_align import AlignmentResult, SequenceAlignment, StructuralAligner
+from structurealign import AlignmentResult, SequenceAlignment, StructuralAligner
 
 
 class TestStructuralAligner: