Improving metadata: Add X and Y stage coordinates in Metadata. #57
Description
Adding this to the code seems to do the trick.
*same as z_coordinates"
def get_parsed_metadata(self):
"""Returns the parsed metadata in dictionary form.
Returns:
dict: the parsed metadata
"""
if self._metadata_parsed is not None:
return self._metadata_parsed
frames_per_channel = self._parse_total_images_per_channel()
self._metadata_parsed = {
"height": parse_if_not_none(self.image_attributes, self._parse_height),
"width": parse_if_not_none(self.image_attributes, self._parse_width),
"date": parse_if_not_none(self.image_text_info, self._parse_date),
"fields_of_view": self._parse_fields_of_view(),
"frames": self._parse_frames(),
"z_levels": self._parse_z_levels(),
"z_coordinates": parse_if_not_none(self.z_data, self._parse_z_coordinates),
"x_coordinates": parse_if_not_none(self.x_data, self._parse_x_coordinates),
"y_coordinates": parse_if_not_none(self.y_data, self._parse_y_coordinates),
"total_images_per_channel": frames_per_channel,
"channels": self._parse_channels(),
"pixel_microns": parse_if_not_none(self.image_calibration, self._parse_calibration)
}
def _parse_x_coordinates(self):
"""The coordinate in micron for all x.
Returns:
list: the x coordinates in micron
"""
return self.x_data.tolist()
def _parse_y_coordinates(self):
"""The coordinate in micron for all y.
Returns:
list: the y coordinates in micron
"""
return self.y_data.tolist()
Any chance we can add this to the main branch code?