updated pinned versions

Author: Jhsmit

dev/deps/_requirements.py

@@ -12,6 +12,9 @@
 """
 #%%
 
+from __future__ import annotations
+
+
 from configparser import ConfigParser
 from functools import reduce
 from operator import add
@@ -47,7 +50,7 @@ def convert(req_list: list, reverse: bool = False):
 
 #%%
 
-EXTRAS = ["web", "pdf", "docs"]
+EXTRAS = ["web", "pdf", "docs", "dev"]
 
 
 def read_setup_cfg():
@@ -115,17 +118,6 @@ def conda_to_pip(conda_yml: Path, pip_txt: Path, extras: Optional[list[str]] = N
     (cwd / pip_txt).write_text("\n".join(output))
 
 
-conda_file = Path("pinned/py38_linux_conda.yml")
-pip_file = Path("pinned/py38_linux_pip.txt")
-
-conda_to_pip(conda_file, pip_file)
-
-#%%
-
-
-#%%
-
-
 def make_requirements_files(extras: Optional[list[str]] = None):
     extras = extras or EXTRAS
     selection = ["base"] + extras
@@ -144,7 +136,7 @@ def make_requirements_files(extras: Optional[list[str]] = None):
 
 if __name__ == "__main__":
     make_requirements_files()
-
+    #
     platforms = ["linux", "windows"]
     for os in platforms:
         conda_file = Path(f"pinned/py38_{os}_conda.yml")

dev/deps/pinned/py38_linux_conda.yml

@@ -1,4 +1,4 @@
-name: py38_pyhdx
+name: py38_pyhdx_01
 channels:
   - conda-forge
   - defaults
@@ -8,16 +8,19 @@ dependencies:
   - alabaster=0.7.12=py_0
   - alsa-lib=1.2.3=h516909a_0
   - aom=3.3.0=h27087fc_1
+  - astroid=2.11.2=py38h578d9bd_1
   - asttokens=2.0.5=pyhd8ed1ab_0
   - attrs=21.4.0=pyhd8ed1ab_0
   - babel=2.9.1=pyh44b312d_0
   - backcall=0.2.0=pyh9f0ad1d_0
   - backports=1.0=py_2
   - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
+  - bandit=1.7.4=py38h578d9bd_1
   - beautifulsoup4=4.11.1=pyha770c72_0
+  - black=22.3.0=pyhd8ed1ab_0
   - bleach=5.0.0=pyhd8ed1ab_0
   - blosc=1.21.0=h9c3ff4c_0
-  - bokeh=2.4.2=py38h578d9bd_0
+  - bokeh=2.4.2=py38h578d9bd_1
   - brotli=1.0.9=h166bdaf_7
   - brotli-bin=1.0.9=h166bdaf_7
   - brotlipy=0.7.0=py38h0a891b7_1004
@@ -38,17 +41,20 @@ dependencies:
   - cryptography=36.0.0=py38h9ce1e76_0
   - cycler=0.11.0=pyhd8ed1ab_0
   - cytoolz=0.11.2=py38h0a891b7_2
-  - dask=2022.4.0=pyhd8ed1ab_0
-  - dask-core=2022.4.0=pyhd8ed1ab_0
+  - dask=2022.4.1=pyhd8ed1ab_0
+  - dask-core=2022.4.1=pyhd8ed1ab_0
+  - dataclasses=0.8=pyhc8e2a94_3
   - dbus=1.13.6=h5008d03_3
   - debugpy=1.6.0=py38hfa26641_0
   - decorator=5.1.1=pyhd8ed1ab_0
   - defusedxml=0.7.1=pyhd8ed1ab_0
-  - distributed=2022.4.0=pyhd8ed1ab_0
+  - dill=0.3.4=pyhd8ed1ab_0
+  - distributed=2022.4.1=pyhd8ed1ab_0
   - docutils=0.17.1=py38h578d9bd_1
   - entrypoints=0.4=pyhd8ed1ab_0
   - executing=0.8.3=pyhd8ed1ab_0
   - expat=2.4.8=h27087fc_0
+  - flake8=4.0.1=pyhd8ed1ab_2
   - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
   - font-ttf-inconsolata=3.000=h77eed37_0
   - font-ttf-source-code-pro=2.038=h77eed37_0
@@ -62,6 +68,8 @@ dependencies:
   - furo=2022.4.7=pyhd8ed1ab_0
   - gettext=0.19.8.1=h73d1719_1008
   - giflib=5.2.1=h36c2ea0_2
+  - gitdb=4.0.9=pyhd8ed1ab_0
+  - gitpython=3.1.27=pyhd8ed1ab_0
   - gmp=6.2.1=h58526e2_0
   - gmpy2=2.1.2=py38h8384b0a_0
   - gst-plugins-base=1.20.1=hcf0ee16_1
@@ -72,31 +80,35 @@ dependencies:
   - hvplot=0.7.3=pyh6c4a22f_0
   - icu=69.1=h9c3ff4c_0
   - idna=3.3=pyhd8ed1ab_0
-  - imagecodecs=2022.2.22=py38hf887e2c_3
-  - imageio=2.16.1=pyhcf75d05_0
+  - imagecodecs=2022.2.22=py38h43af60f_4
+  - imageio=2.17.0=pyhcf75d05_0
   - imagesize=1.3.0=pyhd8ed1ab_0
   - importlib-metadata=4.11.3=py38h578d9bd_1
-  - importlib_resources=5.6.0=pyhd8ed1ab_0
+  - importlib_resources=5.7.1=pyhd8ed1ab_0
+  - iniconfig=1.1.1=pyh9f0ad1d_0
   - intel-openmp=2022.0.1=h06a4308_3633
-  - ipykernel=6.12.1=py38h7f3c49e_0
+  - invoke=1.7.0=pyhd8ed1ab_0
+  - ipykernel=6.13.0=py38h7f3c49e_0
   - ipython=8.2.0=py38h578d9bd_0
+  - isort=5.10.1=pyhd8ed1ab_0
   - jbig=2.1=h7f98852_2003
   - jedi=0.18.1=py38h578d9bd_1
   - jinja2=3.1.1=pyhd8ed1ab_0
-  - jpeg=9e=h7f98852_0
+  - jpeg=9e=h166bdaf_1
   - jsonschema=4.4.0=pyhd8ed1ab_0
   - jupyter_client=7.2.2=pyhd8ed1ab_1
   - jupyter_core=4.9.2=py38h578d9bd_0
-  - jupyterlab_pygments=0.2.0=pyhd8ed1ab_0
+  - jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
   - jxrlib=1.1=h7f98852_2
   - keyutils=1.6.1=h166bdaf_0
   - kiwisolver=1.4.2=py38h43d8883_1
   - krb5=1.19.3=h08a2579_0
+  - lazy-object-proxy=1.7.1=py38h0a891b7_1
   - lcms2=2.12=hddcbb42_0
   - ld_impl_linux-64=2.35.1=h7274673_9
   - lerc=3.0=h9c3ff4c_0
   - libaec=1.0.6=h9c3ff4c_0
-  - libavif=0.10.0=h166bdaf_1
+  - libavif=0.10.1=h166bdaf_0
   - libblas=3.9.0=14_linux64_mkl
   - libbrotlicommon=1.0.9=h166bdaf_7
   - libbrotlidec=1.0.9=h166bdaf_7
@@ -142,11 +154,12 @@ dependencies:
   - lz4=4.0.0=py38h1bf946c_1
   - lz4-c=1.9.3=h9c3ff4c_1
   - markdown=3.3.6=pyhd8ed1ab_0
-  - markdown-it-py=2.0.1=pyhd8ed1ab_0
+  - markdown-it-py=2.1.0=pyhd8ed1ab_0
   - markupsafe=2.1.1=py38h0a891b7_1
   - matplotlib=3.4.3=py38h578d9bd_1
   - matplotlib-base=3.4.3=py38hf4fb855_1
   - matplotlib-inline=0.1.3=pyhd8ed1ab_0
+  - mccabe=0.6.1=py_1
   - mdit-py-plugins=0.3.0=pyhd8ed1ab_0
   - mdurl=0.1.0=pyhd8ed1ab_0
   - mistune=0.8.4=py38h497a2fe_1005
@@ -155,11 +168,15 @@ dependencies:
   - mpfr=4.1.0=h9202a9a_1
   - mpmath=1.2.1=pyhd8ed1ab_0
   - msgpack-python=1.0.3=py38h43d8883_1
-  - mysql-common=8.0.28=h26416b9_3
-  - mysql-libs=8.0.28=hbc51c84_3
-  - myst-parser=0.17.0=pyhd8ed1ab_0
-  - nbclient=0.5.13=pyhd8ed1ab_0
-  - nbconvert=6.4.5=py38h578d9bd_0
+  - mypy=0.942=py38h0a891b7_0
+  - mypy_extensions=0.4.3=py38h578d9bd_5
+  - mysql-common=8.0.28=h26416b9_4
+  - mysql-libs=8.0.28=hbc51c84_4
+  - myst-parser=0.17.2=pyhd8ed1ab_0
+  - nbclient=0.6.0=pyhd8ed1ab_0
+  - nbconvert=6.5.0=pyhd8ed1ab_0
+  - nbconvert-core=6.5.0=pyhd8ed1ab_0
+  - nbconvert-pandoc=6.5.0=pyhd8ed1ab_0
   - nbformat=5.3.0=pyhd8ed1ab_0
   - nbsphinx=0.8.8=pyhd8ed1ab_0
   - ncurses=6.3=h7f8727e_2
@@ -174,28 +191,36 @@ dependencies:
   - ordered-set=4.1.0=pyhd8ed1ab_0
   - packaging=21.3=pyhd8ed1ab_0
   - pandas=1.4.2=py38h47df419_1
-  - pandoc=2.17.1.1=ha770c72_0
+  - pandoc=2.18=ha770c72_0
   - pandocfilters=1.5.0=pyhd8ed1ab_0
-  - panel=0.12.7=pyhd8ed1ab_0
+  - panel=0.13.0=pyhd8ed1ab_0
   - param=1.12.1=pyh6c4a22f_0
   - parso=0.8.3=pyhd8ed1ab_0
   - partd=1.2.0=pyhd8ed1ab_0
+  - pathspec=0.9.0=pyhd8ed1ab_0
+  - pbr=5.8.1=pyhd8ed1ab_0
   - pcre=8.45=h9c3ff4c_0
   - pexpect=4.8.0=py38h32f6830_1
   - pickleshare=0.7.5=py38h32f6830_1002
   - pillow=9.0.1=py38he2f12e7_1
   - pip=21.2.4=py38h06a4308_0
+  - platformdirs=2.5.1=pyhd8ed1ab_0
+  - pluggy=1.0.0=py38h578d9bd_3
   - prompt-toolkit=3.0.29=pyha770c72_0
   - proplot=0.9.3=pyhd8ed1ab_0
   - psutil=5.9.0=py38h0a891b7_1
   - pthread-stubs=0.4=h36c2ea0_1001
   - ptyprocess=0.7.0=pyhd3deb0d_0
   - pure_eval=0.2.2=pyhd8ed1ab_0
+  - py=1.11.0=pyh6c4a22f_0
+  - pycodestyle=2.8.0=pyhd8ed1ab_0
   - pycparser=2.21=pyhd8ed1ab_0
   - pyct=0.4.6=py_0
   - pyct-core=0.4.6=py_0
+  - pyflakes=2.4.0=pyhd8ed1ab_0
   - pygments=2.11.2=pyhd8ed1ab_0
   - pylatex=1.4.1=pyh9f0ad1d_0
+  - pylint=2.13.5=pyhd8ed1ab_0
   - pyopenssl=22.0.0=pyhd8ed1ab_0
   - pyparsing=3.0.8=pyhd8ed1ab_0
   - pyqt=5.12.3=py38h578d9bd_8
@@ -205,6 +230,7 @@ dependencies:
   - pyqtwebengine=5.12.1=py38h7400c14_8
   - pyrsistent=0.18.1=py38h0a891b7_1
   - pysocks=1.7.1=py38h578d9bd_5
+  - pytest=7.1.1=py38h578d9bd_1
   - python=3.8.12=h0744224_3_cpython
   - python-dateutil=2.8.2=pyhd8ed1ab_0
   - python-fastjsonschema=2.15.3=pyhd8ed1ab_0
@@ -220,10 +246,11 @@ dependencies:
   - requests=2.27.1=pyhd8ed1ab_0
   - scikit-image=0.19.2=py38h43a58ef_0
   - scipy=1.8.0=py38h56a6a73_1
-  - setuptools=58.0.4=py38h06a4308_0
+  - setuptools=60.10.0=py38h578d9bd_0
   - shellingham=1.4.0=pyh44b312d_0
   - six=1.16.0=pyh6c4a22f_0
   - sleef=3.5.1=h9b69904_2
+  - smmap=3.0.5=pyh44b312d_0
   - snappy=1.1.8=he1b5a44_3
   - snowballstemmer=2.2.0=pyhd8ed1ab_0
   - sortedcontainers=2.4.0=pyhd8ed1ab_0
@@ -240,24 +267,28 @@ dependencies:
   - sphinxcontrib-serializinghtml=1.1.5=pyhd8ed1ab_2
   - sqlite=3.38.2=hc218d9a_0
   - stack_data=0.2.0=pyhd8ed1ab_0
+  - stevedore=3.5.0=py38h578d9bd_3
   - symfit=0.5.5=pyhd8ed1ab_0
   - sympy=1.10.1=py38h578d9bd_0
   - tblib=1.7.0=pyhd8ed1ab_0
-  - testpath=0.6.0=pyhd8ed1ab_0
   - tifffile=2022.4.8=pyhd8ed1ab_0
+  - tinycss2=1.1.1=pyhd8ed1ab_0
   - tk=8.6.11=h1ccaba5_0
+  - tomli=2.0.1=pyhd8ed1ab_0
   - toolz=0.11.2=pyhd8ed1ab_0
   - toposort=1.7=pyhd8ed1ab_0
   - tornado=6.1=py38h0a891b7_3
   - tqdm=4.64.0=pyhd8ed1ab_0
   - traitlets=5.1.1=pyhd8ed1ab_0
+  - typed-ast=1.5.3=py38h0a891b7_0
   - typer=0.4.1=pyhd8ed1ab_0
-  - typing-extensions=4.1.1=hd8ed1ab_0
-  - typing_extensions=4.1.1=pyha770c72_0
+  - typing-extensions=4.2.0=hd8ed1ab_1
+  - typing_extensions=4.2.0=pyha770c72_1
   - urllib3=1.26.9=pyhd8ed1ab_0
   - wcwidth=0.2.5=pyh9f0ad1d_2
   - webencodings=0.5.1=py_1
   - wheel=0.37.1=pyhd3eb1b0_0
+  - wrapt=1.14.0=py38h0a891b7_1
   - xorg-libxau=1.0.9=h7f98852_0
   - xorg-libxdmcp=1.1.3=h7f98852_0
   - xz=5.2.5=h7b6447c_0
@@ -267,4 +298,4 @@ dependencies:
   - zict=2.1.0=pyhd8ed1ab_0
   - zipp=3.8.0=pyhd8ed1ab_0
   - zlib=1.2.11=h166bdaf_1014
-  - zstd=1.5.2=ha95c52a_0
+  - zstd=1.5.2=ha95c52a_0

dev/deps/pinned/py38_linux_pip.txt

@@ -8,11 +8,11 @@ symfit==0.5.5
 torch==1.11.0
 tqdm==4.64.0
 typer==0.4.1
-dask==2022.4.0
-distributed==2022.4.0
+dask==2022.4.1
+distributed==2022.4.1
 packaging==21.3
 param==1.12.1
-panel==0.12.7
+panel==0.13.0
 bokeh==2.4.2
 holoviews==1.14.8
 colorcet==3.0.0
@@ -22,8 +22,15 @@ pyyaml==6.0
 pylatex==1.4.1
 proplot==0.9.3
 sphinx==4.5.0
-ipykernel==6.12.1
+ipykernel==6.13.0
 nbsphinx==0.8.8
 furo==2022.4.7
 sphinx-copybutton==0.5.0
-sphinx-autodoc-typehints==1.12.0
+sphinx-autodoc-typehints==1.12.0
+bandit==1.7.4
+black==22.3.0
+invoke==1.7.0
+mypy==0.942
+pylint==2.13.5
+pytest==7.1.1
+flake8==4.0.1