Skip to content

Commit 7f21331

Browse files
committed
Upadated dockerfile version
1 parent 63a885f commit 7f21331

File tree

1 file changed

+3
-5
lines changed

1 file changed

+3
-5
lines changed

Dockerfile

Lines changed: 3 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -3,17 +3,15 @@ FROM continuumio/miniconda3
33
RUN conda config --add channels bioconda \
44
&& conda config --add channels conda-forge \
55
&& conda config --add channels danielecook \
6-
&& conda create -n vcf-kit \
7-
danielecook::vcf-kit=0.2.6 \
8-
"bwa>=0.7.17" \
6+
&& conda create -n "bwa>=0.7.17" \
97
"samtools>=1.10" \
108
"bcftools>=1.10" \
119
"blast>=2.2.31" \
1210
"muscle>=3.8.31" \
1311
"primer3>=2.5.0" \
1412
&& conda clean -a
1513

16-
ENV PATH /opt/conda/envs/vcf-kit/bin:${PATH}
17-
RUN conda env export --name vcf-kit > vcf-kit.yml
14+
RUN pip install https://github.com/AndersenLab/VCF-kit/archive/0.3.0.tar.gz
15+
1816
LABEL Name="vcf-kit" Author="Daniel Cook"
1917
RUN apt-get update && apt-get install -y procps

0 commit comments

Comments
 (0)