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lines changed Original file line number Diff line number Diff line change @@ -3,17 +3,15 @@ FROM continuumio/miniconda3
33RUN conda config --add channels bioconda \
44 && conda config --add channels conda-forge \
55 && conda config --add channels danielecook \
6- && conda create -n vcf-kit \
7- danielecook::vcf-kit=0.2.6 \
8- "bwa>=0.7.17" \
6+ && conda create -n "bwa>=0.7.17" \
97 "samtools>=1.10" \
108 "bcftools>=1.10" \
119 "blast>=2.2.31" \
1210 "muscle>=3.8.31" \
1311 "primer3>=2.5.0" \
1412 && conda clean -a
1513
16- ENV PATH /opt/conda/envs/vcf -kit/bin:${PATH}
17- RUN conda env export --name vcf-kit > vcf-kit.yml
14+ RUN pip install https://github.com/AndersenLab/VCF -kit/archive/0.3.0.tar.gz
15+
1816LABEL Name="vcf-kit" Author="Daniel Cook"
1917RUN apt-get update && apt-get install -y procps
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