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Merge pull request #343 from AlexsLemonade/davidsmejia/hotfix-multiplexed-image
hotfix multiplexed download structure image
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docs/download_files.md

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@@ -178,7 +178,7 @@ For project downloads, the counts and QC files will be organized by the _set_ of
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These sample set folders are named with an underscore-separated list of the sample ids for the libraries within, _e.g._, `SCPCS999990_SCPCS999991_SCPCS999992`.
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Bulk RNA-seq data, if present, will follow the [same format as bulk RNA-seq for single-sample libraries](#download-folder-structure-for-project-downloads).
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![multiplexed project download folder](images/multiplexed-download-folder.png){width="600"}
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![multiplexed project download folder](images/multiplexed-download-folder.png){width="750"}
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Because we do not perform demultiplexing to separate cells from multiplexed libraries into sample-specific count matrices, sample downloads from a project with multiplexed data will include all libraries that contain the sample of interest, but these libraries _will still contain cells from other samples_.
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